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Corrigendum: RNA-DNA hybrid (R-loop) immunoprecipitation mapping: an analytical workflow to evaluate inherent biases
László Halász; Zsolt Karányi; Beáta Boros-Oláh; Tímea Kuik-Rózsa; Éva Sipos; Éva Nagy; Ágnes Mosolygó-L; Anett Mázló; Éva Rajnavölgyi; Gábor Halmos; Lóránt Székvölgyi;http://dx.doi.org/10.1101/gr.246652.118 -
A chromosome-scale assembly of the axolotl genome
Jeramiah J. Smith; Nataliya Timoshevskaya; Vladimir A. Timoshevskiy; Melissa C. Keinath; Drew Hardy; S. Randal Voss;http://dx.doi.org/10.1101/gr.241901.118 -
Gene duplication and genetic innovation in cereal genomes
http://dx.doi.org/10.1101/gr.237511.118 -
Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks
Jin Li; Yan Li; Wei Li; Huaibing Luo; Yanping Xi; Shihua Dong; Ming Gao; Peng Xu; Baolong Zhang; Ying Liang; Qingping Zou; Xin Hu; Lina Peng; Dan Zou; Ting Wang; Hongbo Yang; Cizhong Jiang; Shaoliang Peng; Feizhen Wu; Wenqiang Yu;http://dx.doi.org/10.1101/gr.240606.118 -
An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells
Zhizhuo Zhang; Kern Rei Chng; Shreyas Lingadahalli; Zikai Chen; Mei Hui Liu; Huy Hoang Do; Shaojiang Cai; Nicola Rinaldi; Huay Mei Poh; Guoliang Li; Ying Ying Sung; Charlie L. Heng; Leighton J. Core; Si Kee Tan; Xiaoan Ruan; John T. Lis; Manolis Kellis; Yijun Ruan; Wing-Kin Sung; Edwin Cheung;http://dx.doi.org/10.1101/gr.230243.117 -
Fast and flexible bacterial genomic epidemiology with PopPUNK
John A. Lees; Simon R. Harris; Gerry Tonkin-Hill; Rebecca A. Gladstone; Stephanie W. Lo; Jeffrey N. Weiser; Jukka Corander; Stephen D. Bentley; Nicholas J. Croucher;http://dx.doi.org/10.1101/gr.241455.118 -
MicroRNAs reinforce repression of PRC2 transcriptional targets independently and through a feed-forward regulatory network
http://dx.doi.org/10.1101/gr.238311.118 -
A dynamic and integrated epigenetic program at distal regions orchestrates transcriptional responses to VEGFA
Shiyan Wang; Jiahuan Chen; Sara P. Garcia; Xiaodong Liang; Fang Zhang; Pengyi Yan; Huijing Yu; Weiting Wei; Zixuan Li; Jingfang Wang; Huangying Le; Zeguang Han; Xusheng Luo; Daniel S. Day; Sean M. Stevens; Yan Zhang; Peter J. Park; Zhi-jie Liu; Kun Sun; Guo-cheng Yuan; William T. Pu; Bing Zhang;http://dx.doi.org/10.1101/gr.239053.118 -
CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
http://dx.doi.org/10.1101/gr.241547.118 -
Systematic interrogation of human promoters
Shira Weingarten-Gabbay; Ronit Nir; Shai Lubliner; Eilon Sharon; Yael Kalma; Adina Weinberger; Eran Segal;http://dx.doi.org/10.1101/gr.236075.118